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  5. GSVIVT01020068001

GSVIVT01020068001


Description : Cell wall.pectin.modification and degradation.pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020068001
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.09 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.19 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.17 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.03 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.15 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.07 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.05 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT4G13710 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.17 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G63180 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Gb_19802 No alias pectate lyase 0.04 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.13 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.13 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.07 Archaeplastida
LOC_Os06g05272.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.1 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10353668g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.03 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.02 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.06 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.03 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.05 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g031960.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.16 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.07 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.06 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.17 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.14 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.07 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.18 Archaeplastida
Solyc06g071020.3.1 No alias pectate lyase 0.08 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.09 Archaeplastida
Zm00001e030632_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 174 354
IPR007524 Pec_lyase_N 27 79
No external refs found!