Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.RNPS1 component
Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01020424001 | |
Cluster | HCCA: Cluster_63 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00071p00150630 | evm_27.TU.AmTr_v1... | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
LOC_Os01g72890.1 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.05 | Archaeplastida | |
Solyc10g005590.4.1 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.05 | Archaeplastida | |
Zm00001e018566_P001 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.04 | Archaeplastida | |
Zm00001e028289_P001 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
MF | GO:0003713 | transcription coactivator activity | IEP | Neighborhood |
BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
CC | GO:0016592 | mediator complex | IEP | Neighborhood |
MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 106 | 174 |
No external refs found! |