GSVIVT01020424001


Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.RNPS1 component


Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020424001
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00150630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
LOC_Os01g72890.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Solyc10g005590.4.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Zm00001e018566_P001 No alias component RNPS1 of RNA quality control Exon Junction complex 0.04 Archaeplastida
Zm00001e028289_P001 No alias component RNPS1 of RNA quality control Exon Junction complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 106 174
No external refs found!