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  5. GSVIVT01021553001

GSVIVT01021553001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021553001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.04 Archaeplastida
GSVIVT01025691001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_32404 No alias transcription factor (ARF) 0.05 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os01g13520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_85955g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.01 Archaeplastida
Solyc02g037530.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc03g031970.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc09g007810.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc10g086130.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e015164_P002 No alias transcription factor (ARF) 0.07 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e020205_P004 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR010525 Auxin_resp 253 336
IPR003340 B3_DNA-bd 127 228
No external refs found!