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  5. GSVIVT01022190001

GSVIVT01022190001


Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component


Gene families : OG0002679 (Archaeplastida) Phylogenetic Tree(s): OG0002679_tree ,
OG_05_0002265 (LandPlants) Phylogenetic Tree(s): OG_05_0002265_tree ,
OG_06_0002102 (SeedPlants) Phylogenetic Tree(s): OG_06_0002102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022190001
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021319.33 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 Archaeplastida
LOC_Os03g26630.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.04 Archaeplastida
MA_10435120g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7197g0010 No alias component ACINUS of RNA quality control Exon Junction complex 0.03 Archaeplastida
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.03 Archaeplastida
Solyc04g072670.4.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.05 Archaeplastida
Zm00001e037964_P002 No alias component ACINUS of RNA quality control Exon Junction complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR032552 RSB_motif 369 411
No external refs found!