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  5. GSVIVT01024262001

GSVIVT01024262001


Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.STIPL disassembly factor


Gene families : OG0003471 (Archaeplastida) Phylogenetic Tree(s): OG0003471_tree ,
OG_05_0003246 (LandPlants) Phylogenetic Tree(s): OG_05_0003246_tree ,
OG_06_0004880 (SeedPlants) Phylogenetic Tree(s): OG_06_0004880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024262001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00133670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AT1G17070 No alias GC-rich sequence DNA-binding factor-like protein with... 0.03 Archaeplastida
Cpa|evm.model.tig00001065.26 No alias Septin and tuftelin-interacting protein 1 homolog 1... 0.01 Archaeplastida
Cre07.g325713 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
LOC_Os12g42140.1 No alias STIPL spliceosome disassembly factor 0.03 Archaeplastida
Mp3g24100.1 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
Pp3c19_6430V3.1 No alias GC-rich sequence DNA-binding factor-like protein with... 0.03 Archaeplastida
Solyc10g005990.4.1 No alias STIPL spliceosome disassembly factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000467 G_patch_dom 116 157
IPR022783 GCFC_dom 312 580
IPR022159 STIP/TFIP11_N 6 99
No external refs found!