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  5. GSVIVT01025019001

GSVIVT01025019001


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025019001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00197p00028970 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.03 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.03 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.04 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.03 Archaeplastida
Cpa|evm.model.tig00001085.4 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Gb_06384 No alias histone (H2A) 0.02 Archaeplastida
Gb_25326 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.02 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.03 Archaeplastida
Pp3c3_30120V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.04 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048478 replication fork protection IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 20 97
IPR032454 Histone_H2A_C 100 134
No external refs found!