GSVIVT01028044001

Description : Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana

Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01028044001
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.18	Archaeplastida
AMTR_s00019p00055210	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectin lyase	0.03	Archaeplastida
AMTR_s00019p00057300	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AMTR_s00019p00130680	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectin lyase	0.04	Archaeplastida
AMTR_s00059p00207710	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AT1G02790	PGA4	polygalacturonase 4	0.07	Archaeplastida
AT3G07820	No alias	Pectin lyase-like superfamily protein	0.17	Archaeplastida
AT3G07830	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT3G07840	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G07850	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G14040	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT5G48140	No alias	Pectin lyase-like superfamily protein	0.11	Archaeplastida
LOC_Os01g33300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.1	Archaeplastida
LOC_Os02g10300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.09	Archaeplastida
LOC_Os06g35320.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.06	Archaeplastida
LOC_Os06g40890.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.12	Archaeplastida
Solyc01g066070.3.1	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.13	Archaeplastida
Solyc06g009200.3.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.13	Archaeplastida
Solyc07g044870.4.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.06	Archaeplastida
Solyc10g047570.2.1	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.04	Archaeplastida
Solyc12g006293.1.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.03	Archaeplastida
Solyc12g006313.1.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.03	Archaeplastida
Zm00001e014066_P002	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	Archaeplastida
Zm00001e017747_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	Archaeplastida
Zm00001e022246_P002	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.04	Archaeplastida
Zm00001e025021_P003	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.1	Archaeplastida
Zm00001e026354_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.09	Archaeplastida
Zm00001e030524_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.06	Archaeplastida
Zm00001e030528_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.03	Archaeplastida
Zm00001e030529_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.07	Archaeplastida
Zm00001e030530_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.09	Archaeplastida
Zm00001e030532_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize : 345.0)	0.04	Archaeplastida
Zm00001e030533_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	Archaeplastida
Zm00001e030534_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	Archaeplastida
Zm00001e030535_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	Archaeplastida
Zm00001e030537_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	Archaeplastida
Zm00001e030541_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.02	Archaeplastida
Zm00001e042494_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009790	embryo development	IEP	Neighborhood
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Neighborhood
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	72	389

External Links

No external refs found!

GSVIVT01028044001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation