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  5. GSVIVT01028110001

GSVIVT01028110001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-v-type E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0009096 (LandPlants) Phylogenetic Tree(s): OG_05_0009096_tree ,
OG_06_0007079 (SeedPlants) Phylogenetic Tree(s): OG_06_0007079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028110001
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00126340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 Archaeplastida
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.06 Archaeplastida
LOC_Os11g38800.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g020190.2.1 No alias Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g079530.4.1 No alias RING-v-class E3 ligase 0.09 Archaeplastida
Solyc04g007600.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc08g014080.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e021220_P001 No alias RING-v-class E3 ligase 0.06 Archaeplastida
Zm00001e025697_P001 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Zm00001e026209_P003 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e031477_P002 No alias RING-v-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 73 184
IPR011016 Znf_RING-CH 20 67
No external refs found!