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  5. GSVIVT01028198001

GSVIVT01028198001


Description : Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028198001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.04 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.11 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.1 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.12 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.12 Archaeplastida
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.09 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.08 Archaeplastida
LOC_Os01g22490.1 No alias component RPS27a of SSU proteome 0.07 Archaeplastida
LOC_Os03g13170.1 No alias component RPL40 of LSU proteome component 0.1 Archaeplastida
LOC_Os05g06770.1 No alias component RPS27a of SSU proteome 0.07 Archaeplastida
LOC_Os09g39500.1 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
MA_10435699g0020 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.13 Archaeplastida
MA_529552g0010 No alias component RPS27a of SSU proteome 0.12 Archaeplastida
MA_9129425g0010 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.07 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.11 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.05 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.07 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.14 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.08 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.07 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.08 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.1 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.09 Archaeplastida
Smo111605 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Smo93613 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.14 Archaeplastida
Solyc01g096290.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc03g082570.4.1 No alias component RPL40 of LSU proteome component 0.05 Archaeplastida
Solyc08g008590.4.1 No alias component RPL40 of LSU proteome component 0.04 Archaeplastida
Solyc08g083120.3.1 No alias component RPL40 of LSU proteome component 0.1 Archaeplastida
Solyc12g098940.2.1 No alias component RPS27a of SSU proteome 0.09 Archaeplastida
Solyc12g099025.1.1 No alias component RPS27a of SSU proteome 0.09 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Zm00001e009474_P001 No alias component RPL40 of LSU proteome component 0.03 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.11 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 34 98
No external refs found!