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  5. GSVIVT01029458001

GSVIVT01029458001


Description : RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0010926 (LandPlants) Phylogenetic Tree(s): OG_05_0010926_tree ,
OG_06_0010867 (SeedPlants) Phylogenetic Tree(s): OG_06_0010867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029458001
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263730 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00026p00153500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00142p00049490 evm_27.TU.AmTr_v1... Nutrient uptake.phosphorus assimilation.phosphate... 0.03 Archaeplastida
AT1G32240 KAN2 Homeodomain-like superfamily protein 0.04 Archaeplastida
Gb_17429 No alias G2-like GARP transcription factor 0.05 Archaeplastida
LOC_Os06g35140.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os06g45410.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os06g45890.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os07g25710.2 No alias PHR1 transcription factor involved in proline synthesis... 0.03 Archaeplastida
LOC_Os08g33050.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os09g12750.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_10432937g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_138039g0010 No alias G2-like GARP transcription factor 0.05 Archaeplastida
MA_6619111g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
MA_8183372g0010 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_8865g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Pp3c12_11150V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c1_41530V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c21_2850V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c2_310V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Pp3c3_30710V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c8_8720V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Solyc06g066180.4.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Solyc06g066340.4.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Solyc07g045000.4.1 No alias Putative Myb family transcription factor At1g14600... 0.04 Archaeplastida
Solyc10g076460.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc11g022470.2.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e011962_P002 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e013199_P003 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e015514_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e022412_P003 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Zm00001e023282_P002 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e030689_P002 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e037761_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e041868_P002 No alias G2-like GARP transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 326 373
IPR001005 SANT/Myb 238 289
No external refs found!