GSVIVT01030171001

Description : Transcription elongation factor TFIIS OS=Arabidopsis thaliana

Gene families : OG0003338 (Archaeplastida) Phylogenetic Tree(s): OG0003338_tree ,
OG_05_0004673 (LandPlants) Phylogenetic Tree(s): OG_05_0004673_tree ,
OG_06_0005047 (SeedPlants) Phylogenetic Tree(s): OG_06_0005047_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030171001
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp7g11630.1	No alias	Transcription elongation factor TFIIS OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e006140_P002	No alias	Transcription elongation factor TFIIS OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003618	TFIIS_cen_dom	152	268
IPR001222	Znf_TFIIS	282	320
IPR017923	TFIIS_N	37	86

External Links

No external refs found!