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  5. GSVIVT01031076001

GSVIVT01031076001


Description : Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein


Gene families : OG0002164 (Archaeplastida) Phylogenetic Tree(s): OG0002164_tree ,
OG_05_0001522 (LandPlants) Phylogenetic Tree(s): OG_05_0001522_tree ,
OG_06_0001206 (SeedPlants) Phylogenetic Tree(s): OG_06_0001206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031076001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00204550 evm_27.TU.AmTr_v1... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 Archaeplastida
AT1G67230 LINC1 little nuclei1 0.05 Archaeplastida
AT1G68790 LINC3 little nuclei3 0.05 Archaeplastida
AT5G65770 LINC4 little nuclei4 0.05 Archaeplastida
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.09 Archaeplastida
LOC_Os01g56140.1 No alias CRWN nuclear lamina lamin-like protein 0.05 Archaeplastida
LOC_Os02g48010.1 No alias CRWN nuclear lamina lamin-like protein 0.07 Archaeplastida
Mp3g21160.1 No alias CRWN nuclear lamina lamin-like protein 0.02 Archaeplastida
Pp3c1_1360V3.1 No alias little nuclei1 0.02 Archaeplastida
Solyc02g089800.3.1 No alias CRWN nuclear lamina lamin-like protein 0.08 Archaeplastida
Solyc02g091960.4.1 No alias CRWN nuclear lamina lamin-like protein 0.03 Archaeplastida
Solyc03g045050.4.1 No alias CRWN nuclear lamina lamin-like protein 0.03 Archaeplastida
Zm00001e019705_P002 No alias CRWN nuclear lamina lamin-like protein 0.05 Archaeplastida
Zm00001e023357_P001 No alias CRWN nuclear lamina lamin-like protein 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!