GSVIVT01033181001


Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC3/TTN7 component


Gene families : OG0005086 (Archaeplastida) Phylogenetic Tree(s): OG0005086_tree ,
OG_05_0006097 (LandPlants) Phylogenetic Tree(s): OG_05_0006097_tree ,
OG_06_0005481 (SeedPlants) Phylogenetic Tree(s): OG_06_0005481_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033181001
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00198530 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.06 Archaeplastida
AMTR_s00029p00198810 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.14 Archaeplastida
Cpa|evm.model.tig00000711.46 No alias Structural maintenance of chromosomes protein 3... 0.01 Archaeplastida
Cre10.g445650 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
LOC_Os02g04040.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.09 Archaeplastida
LOC_Os02g04050.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
MA_10427183g0010 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
MA_10429322g0010 No alias component SMC3/TTN7 of cohesin regulator complex 0.03 Archaeplastida
MA_463997g0010 No alias Structural maintenance of chromosomes protein 3... 0.03 Archaeplastida
Mp5g09700.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.06 Archaeplastida
Pp3c24_13420V3.1 No alias Structural maintenance of chromosomes (SMC) family protein 0.05 Archaeplastida
Solyc06g073780.4.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.05 Archaeplastida
Zm00001e032592_P001 No alias component SMC3/TTN7 of cohesin regulator complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR010935 SMC_hinge 522 633
IPR003395 RecF/RecN/SMC_N 2 1181
No external refs found!