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  5. GSVIVT01034361001

GSVIVT01034361001


Description : High mobility group B protein 7 OS=Arabidopsis thaliana


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0006412 (SeedPlants) Phylogenetic Tree(s): OG_06_0006412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034361001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00094550 evm_27.TU.AmTr_v1... High mobility group B protein 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
AMTR_s00171p00070550 evm_27.TU.AmTr_v1... High mobility group B protein 7 OS=Arabidopsis thaliana 0.11 Archaeplastida
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.06 Archaeplastida
AT5G23420 HMGB6 high-mobility group box 6 0.14 Archaeplastida
Cpa|evm.model.tig00000553.19 No alias FACT complex subunit SSRP1 OS=Vicia faba 0.03 Archaeplastida
Cpa|evm.model.tig00000663.58 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00001339.6 No alias No description available 0.02 Archaeplastida
Cre06.g261450 No alias No description available 0.02 Archaeplastida
Gb_05796 No alias High mobility group B protein 1 OS=Arabidopsis thaliana... 0.12 Archaeplastida
Gb_32435 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_34784 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.22 Archaeplastida
LOC_Os08g01100.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os09g37910.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.03 Archaeplastida
MA_10436440g0030 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_86565g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
Mp8g07450.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Pp3c17_7580V3.1 No alias high mobility group B3 0.07 Archaeplastida
Solyc04g008820.3.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.18 Archaeplastida
Zm00001e024274_P002 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.14 Archaeplastida
Zm00001e034918_P002 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 112.0) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 99 168
No external refs found!