GSVIVT01036447001

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.RAV-type transcription factor

Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000701 (SeedPlants) Phylogenetic Tree(s): OG_06_0000701_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01036447001
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AT1G50680	No alias	AP2/B3 transcription factor family protein	0.02	Archaeplastida
AT2G46870	NGA1	AP2/B3-like transcriptional factor family protein	0.05	Archaeplastida
GSVIVT01033902001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
LOC_Os01g49830.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
LOC_Os06g01860.1	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
LOC_Os11g05740.1	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
MA_10432625g0010	No alias	transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_10436315g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.06	Archaeplastida
MA_106270g0010	No alias	transcription factor (RAV/NGATHA)	0.06	Archaeplastida
MA_20372g0020	No alias	transcription factor (RAV/NGATHA)	0.02	Archaeplastida
MA_23673g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_246350g0010	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
MA_3834g0010	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida
MA_865117g0010	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_94318g0010	No alias	transcription factor (AP2-RAV)	0.03	Archaeplastida
MA_953813g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp2g22250.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Pp3c1_16700V3.1	No alias	related to ABI3/VP1 1	0.03	Archaeplastida
Pp3c2_23660V3.1	No alias	AP2/B3 transcription factor family protein	0.04	Archaeplastida
Solyc05g004000.1.1	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
Solyc08g013690.1.1	No alias	transcription factor (RAV/NGATHA)	0.04	Archaeplastida
Solyc12g098460.2.1	No alias	AP2/ERF and B3 domain-containing transcription factor...	0.05	Archaeplastida
Zm00001e024165_P001	No alias	transcription factor (RAV/NGATHA)	0.03	Archaeplastida
Zm00001e028111_P001	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	Archaeplastida
Zm00001e041372_P001	No alias	transcription factor (RAV/NGATHA)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	153	219
IPR001471	AP2/ERF_dom	61	101

External Links

No external refs found!

GSVIVT01036447001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation