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  5. GSVIVT01037344001

GSVIVT01037344001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037344001
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00007p00101250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00038p00046180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00129p00033080 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00129p00070300 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT1G02810 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G10710 RHS12 root hair specific 12 0.03 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.03 Archaeplastida
AT5G04960 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G51490 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G64640 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
GSVIVT01023135001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.09 Archaeplastida
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01031667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01035108001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
GSVIVT01037349001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.07 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.05 Archaeplastida
Gb_06354 No alias pectin methylesterase 0.03 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.04 Archaeplastida
Gb_24214 No alias pectin methylesterase 0.05 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os02g18650.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os08g34900.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g36240.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10372207g0010 No alias pectin methylesterase 0.05 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.05 Archaeplastida
MA_133919g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.02 Archaeplastida
MA_2017g0010 No alias pectin methylesterase 0.05 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_51464g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_84680g0010 No alias pectin methylesterase 0.06 Archaeplastida
MA_86577g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.04 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.03 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c4_22420V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc01g091050.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.06 Archaeplastida
Solyc02g080200.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g081990.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083840.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e017514_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e036264_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015939 pantothenate metabolic process IEP Neighborhood
BP GO:0015940 pantothenate biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 1 145
No external refs found!