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  5. GSVIVT01037800001

GSVIVT01037800001


Description : Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana


Gene families : OG0004283 (Archaeplastida) Phylogenetic Tree(s): OG0004283_tree ,
OG_05_0002958 (LandPlants) Phylogenetic Tree(s): OG_05_0002958_tree ,
OG_06_0001776 (SeedPlants) Phylogenetic Tree(s): OG_06_0001776_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037800001
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT2G04170 No alias TRAF-like family protein 0.04 Archaeplastida
AT2G04190 No alias TRAF-like family protein 0.05 Archaeplastida
AT3G20370 No alias TRAF-like family protein 0.04 Archaeplastida
AT3G22080 No alias TRAF-like family protein 0.03 Archaeplastida
AT4G09780 No alias TRAF-like family protein 0.03 Archaeplastida
AT5G26260 No alias TRAF-like family protein 0.04 Archaeplastida
AT5G26280 No alias TRAF-like family protein 0.03 Archaeplastida
Solyc07g049520.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 255 380
IPR002083 MATH/TRAF_dom 104 230
No external refs found!