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  5. Cre06.g307450

Cre06.g307450


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component


Gene families : OG0003158 (Archaeplastida) Phylogenetic Tree(s): OG0003158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g307450
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00096200 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AT1G14650 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.04 Archaeplastida
Cpa|evm.model.tig00021501.12 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
GSVIVT01012058001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_03741 No alias component SF3A1 of splicing factor 3A complex 0.06 Archaeplastida
Gb_32888 No alias component SF3A1 of splicing factor 3A complex 0.04 Archaeplastida
LOC_Os02g14780.2 No alias component SF3A1 of splicing factor 3A complex 0.04 Archaeplastida
MA_10432431g0010 No alias component SF3A1 of splicing factor 3A complex 0.03 Archaeplastida
Mp6g07670.1 No alias component SF3A1 of splicing factor 3A complex 0.05 Archaeplastida
Pp3c18_11660V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.02 Archaeplastida
Pp3c23_15260V3.1 No alias SWAP (Suppressor-of-White-APricot)/surp... 0.02 Archaeplastida
Smo146605 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Solyc02g081960.3.1 No alias component SF3A1 of splicing factor 3A complex 0.07 Archaeplastida
Solyc04g005690.4.1 No alias component SF3A1 of splicing factor 3A complex 0.08 Archaeplastida
Zm00001e017307_P001 No alias component SF3A1 of splicing factor 3A complex 0.02 Archaeplastida
Zm00001e025538_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Neighborhood
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000061 Surp 66 115
IPR000061 Surp 181 232
IPR000626 Ubiquitin_dom 795 851
IPR022030 SF3A1 250 498
No external refs found!