No description available
Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre07.g352650 | |
Cluster | HCCA: Cluster_121 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00267190 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | Archaeplastida | |
AMTR_s00059p00102910 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
Cpa|evm.model.tig00021464.4 | No alias | No description available | 0.02 | Archaeplastida | |
Gb_01578 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | Archaeplastida | |
Gb_22808 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.02 | Archaeplastida | |
MA_96898g0010 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.05 | Archaeplastida | |
Pp3c6_9210V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.02 | Archaeplastida | |
Solyc02g062920.3.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.02 | Archaeplastida | |
Solyc02g085570.4.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.02 | Archaeplastida | |
Solyc09g090420.4.1 | No alias | Splicing factor U2af large subunit B OS=Oryza sativa... | 0.02 | Archaeplastida | |
Solyc12g008750.3.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
Zm00001e021119_P005 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0005047 | signal recognition particle binding | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006605 | protein targeting | IEP | Neighborhood |
BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
BP | GO:0008104 | protein localization | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
BP | GO:0009966 | regulation of signal transduction | IEP | Neighborhood |
BP | GO:0010646 | regulation of cell communication | IEP | Neighborhood |
BP | GO:0015031 | protein transport | IEP | Neighborhood |
BP | GO:0015833 | peptide transport | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
BP | GO:0023051 | regulation of signaling | IEP | Neighborhood |
MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | Neighborhood |
BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
MF | GO:0033218 | amide binding | IEP | Neighborhood |
BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
BP | GO:0042886 | amide transport | IEP | Neighborhood |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood |
BP | GO:0051641 | cellular localization | IEP | Neighborhood |
BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |