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  5. Cre08.g377200

Cre08.g377200


Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g377200
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.02 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.04 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.03 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.03 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.02 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.06 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01017821001 No alias No description available 0.03 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_16310 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.01 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g02290.1 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.01 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.04 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.03 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.05 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.03 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.02 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.05 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.05 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 641 705
IPR023780 Chromo_domain 367 412
IPR023780 Chromo_domain 456 544
IPR001650 Helicase_C 922 1028
IPR009462 DUF1086 1457 1574
IPR019787 Znf_PHD-finger 272 323
IPR000330 SNF2_N 732 887
No external refs found!