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  5. Cre09.g386731

Cre09.g386731


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g386731
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AT3G32940 No alias RNA-binding KH domain-containing protein 0.02 Archaeplastida
AT5G51300 No alias splicing factor-related 0.03 Archaeplastida
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01025406001 No alias Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_41039 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
LOC_Os04g31620.1 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
LOC_Os08g01070.2 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_8555g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
Pp3c11_24710V3.1 No alias splicing factor-related 0.04 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.01 Archaeplastida
Solyc01g006010.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
Zm00001e040741_P001 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Neighborhood
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 471 539
IPR000504 RRM_dom 579 648
IPR004088 KH_dom_type_1 302 372
IPR032570 SF1-HH 187 283
No external refs found!