Cre12.g490150

Description : ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana

Gene families : OG0000499 (Archaeplastida) Phylogenetic Tree(s): OG0000499_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g490150
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00224070	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.01	Archaeplastida
AMTR_s00077p00186260	evm_27.TU.AmTr_v1...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.06	Archaeplastida
AT1G10930	ATRECQ4A, ATSGS1, RECQ4A	DNA helicase (RECQl4A)	0.01	Archaeplastida
AT3G05740	RECQI1	RECQ helicase l1	0.03	Archaeplastida
Cpa\|evm.model.tig00020961.28	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01023325001	No alias	Cell cycle.mitosis and meiosis.meiotic...	0.04	Archaeplastida
Gb_08699	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os04g35420.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.03	Archaeplastida
LOC_Os07g48360.1	No alias	Mediator of RNA polymerase II transcription subunit 34...	0.03	Archaeplastida
LOC_Os11g44910.1	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.02	Archaeplastida
MA_10427638g0020	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10429752g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_10435954g0010	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_10436537g0010	No alias	helicase component RecQ4A of RTR Holliday junction...	0.07	Archaeplastida
MA_30494g0010	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_361558g0010	No alias	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis...	0.03	Archaeplastida
Mp4g14290.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.05	Archaeplastida
Mp4g16510.1	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.01	Archaeplastida
Pp3c12_1610V3.1	No alias	RECQ helicase L2	0.02	Archaeplastida
Pp3c2_1760V3.1	No alias	RECQ helicase L4B	0.06	Archaeplastida
Solyc01g100280.4.1	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.09	Archaeplastida
Solyc01g103960.3.1	No alias	helicase component RecQ4A of RTR Holliday junction...	0.04	Archaeplastida
Zm00001e035873_P003	No alias	ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004003	ATP-dependent DNA helicase activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008026	ATP-dependent helicase activity	None	Extended
MF	GO:0008094	DNA-dependent ATPase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	None	Extended
MF	GO:0043140	ATP-dependent 3'-5' DNA helicase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003896	DNA primase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	Neighborhood
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
MF	GO:0015631	tubulin binding	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0043015	gamma-tubulin binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	57	214
IPR002121	HRDC_dom	603	668
IPR001650	Helicase_C	271	366
IPR032284	RecQ_Zn-bd	379	444
IPR018982	RQC_domain	454	562

External Links

No external refs found!

Cre12.g490150

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation