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  5. Cre12.g492200

Cre12.g492200


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor


Gene families : OG0001716 (Archaeplastida) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g492200
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00025p00159760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT4G29940 PRHA pathogenesis related homeodomain protein A 0.02 Archaeplastida
GSVIVT01037894001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
MA_10427612g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436527g0010 No alias transcription factor (PHD) 0.01 Archaeplastida
Mp4g02060.1 No alias transcription factor (PHD) 0.03 Archaeplastida
Zm00001e013656_P001 No alias transcription factor (PHD) 0.01 Archaeplastida
Zm00001e019808_P001 No alias transcription factor (PHD) 0.02 Archaeplastida
Zm00001e027428_P001 No alias transcription factor (PHD) 0.01 Archaeplastida
Zm00001e029056_P003 No alias transcription factor (PHD) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 2045 2099
No external refs found!