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  5. Cre12.g493400

Cre12.g493400


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG0003989 (Archaeplastida) Phylogenetic Tree(s): OG0003989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g493400
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.07 Archaeplastida
AT5G48600 ATCAP-C, ATSMC4,... structural maintenance of chromosome 3 0.01 Archaeplastida
Cpa|evm.model.tig00000711.41 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
GSVIVT01011402001 No alias Structural maintenance of chromosomes protein 4... 0.01 Archaeplastida
GSVIVT01011408001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
Gb_03310 No alias component CAP-C/SMC4 of condensin I/II complex 0.1 Archaeplastida
LOC_Os05g41750.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.08 Archaeplastida
MA_10325649g0010 No alias Structural maintenance of chromosomes protein 4... 0.01 Archaeplastida
MA_10432810g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_317249g0010 No alias component CAP-C/SMC4 of condensin I/II complex 0.09 Archaeplastida
MA_7369647g0010 No alias Structural maintenance of chromosomes protein 4... 0.08 Archaeplastida
MA_82161g0010 No alias Structural maintenance of chromosomes protein 4... 0.05 Archaeplastida
MA_9366726g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp5g06430.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.11 Archaeplastida
Pp3c18_16050V3.1 No alias structural maintenance of chromosome 3 0.03 Archaeplastida
Solyc02g087980.3.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.06 Archaeplastida
Zm00001e032031_P001 No alias component CAP-C/SMC4 of condensin I/II complex 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Neighborhood
CC GO:0000776 kinetochore IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
CC GO:0000818 nuclear MIS12/MIND complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004146 dihydrofolate reductase activity IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046653 tetrahydrofolate metabolic process IEP Neighborhood
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR010935 SMC_hinge 548 664
IPR003395 RecF/RecN/SMC_N 18 1223
No external refs found!