Description : Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG12-ATG5 ATG8-PE-ligase E3 dimer.ATG12 ubiquitin-fold component

Gene families : OG0008257 (Archaeplastida) Phylogenetic Tree(s): OG0008257_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Cre12.g557000
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00226010 evm_27.TU.AmTr_v1... Vesicle trafficking.autophagosome formation.ATG8/ATG12... 0.03 Archaeplastida
AT1G54210 ATATG12, ATG12A, APG12 Ubiquitin-like superfamily protein 0.03 Archaeplastida
Solyc12g049310.2.1 No alias ubiquitin-fold component ATG12 of autophagosome... 0.01 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007242 Atg12 8 91
No external refs found!