Cre12.g557000

Description : Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG12-ATG5 ATG8-PE-ligase E3 dimer.ATG12 ubiquitin-fold component

Gene families : OG0008257 (Archaeplastida) Phylogenetic Tree(s): OG0008257_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g557000
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00226010	evm_27.TU.AmTr_v1...	Vesicle trafficking.autophagosome formation.ATG8/ATG12...	0.03	Archaeplastida
AT1G54210	ATATG12, ATG12A, APG12	Ubiquitin-like superfamily protein	0.03	Archaeplastida
Solyc12g049310.2.1	No alias	ubiquitin-fold component ATG12 of autophagosome...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007033	vacuole organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1905037	autophagosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007242	Atg12	8	91

External Links

No external refs found!

Cre12.g557000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation