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  5. AMTR_s00056p00047160

AMTR_s00056p00047160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.29

Description : Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000346 (Archaeplastida) Phylogenetic Tree(s): OG0000346_tree ,
OG_05_0008809 (LandPlants) Phylogenetic Tree(s): OG_05_0008809_tree ,
OG_06_0010609 (SeedPlants) Phylogenetic Tree(s): OG_06_0010609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00047160
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AT3G02450 No alias cell division protein ftsH, putative 0.07 Archaeplastida
AT3G16290 EMB2083 AAA-type ATPase family protein 0.06 Archaeplastida
AT4G23940 No alias FtsH extracellular protease family 0.05 Archaeplastida
Cpa|evm.model.tig00021179.74 No alias ATP-dependent zinc metalloprotease FTSH 1, chloroplastic... 0.01 Archaeplastida
Cre03.g201100 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.02 Archaeplastida
Cre07.g352350 No alias ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.01 Archaeplastida
Cre09.g393950 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.02 Archaeplastida
GSVIVT01017029001 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.05 Archaeplastida
GSVIVT01019239001 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.08 Archaeplastida
Gb_12830 No alias component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.03 Archaeplastida
Gb_20809 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_28961 No alias component FtsHi of protein translocation ATPase motor complex 0.05 Archaeplastida
Gb_32360 No alias component FtsHi of protein translocation ATPase motor complex 0.05 Archaeplastida
LOC_Os04g39190.1 No alias component FtsHi of protein translocation ATPase motor complex 0.03 Archaeplastida
LOC_Os06g45820.1 No alias component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.03 Archaeplastida
LOC_Os06g51029.1 No alias component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.02 Archaeplastida
MA_10435856g0010 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.1 Archaeplastida
MA_188257g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_98203g0010 No alias No annotation 0.05 Archaeplastida
Mp6g01370.1 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.08 Archaeplastida
Mp6g15080.1 No alias component FtsHi of protein translocation ATPase motor complex 0.07 Archaeplastida
Pp3c17_20370V3.1 No alias AAA-type ATPase family protein 0.12 Archaeplastida
Pp3c20_15780V3.1 No alias FtsH extracellular protease family 0.03 Archaeplastida
Pp3c4_20860V3.1 No alias cell division protein ftsH, putative 0.05 Archaeplastida
Smo152929 No alias Protein degradation.peptidase families.metallopeptidase... 0.05 Archaeplastida
Smo166773 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.06 Archaeplastida
Smo98591 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.03 Archaeplastida
Solyc03g046340.3.1 No alias component FtsHi of protein translocation ATPase motor complex 0.04 Archaeplastida
Solyc08g082530.4.1 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.08 Archaeplastida
Solyc12g044400.3.1 No alias component FtsHi of protein translocation ATPase motor complex 0.05 Archaeplastida
Zm00001e007868_P001 No alias component FtsHi of protein translocation ATPase motor complex 0.03 Archaeplastida
Zm00001e030153_P001 No alias component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.03 Archaeplastida
Zm00001e037753_P001 No alias component FtsH1|2|5|6|8 of FtsH plastidial protease complexes 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009317 acetyl-CoA carboxylase complex IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000642 Peptidase_M41 668 842
IPR003959 ATPase_AAA_core 454 586
No external refs found!