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  5. AMTR_s00057p00204520

AMTR_s00057p00204520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.241

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000200 (Archaeplastida) Phylogenetic Tree(s): OG0000200_tree ,
OG_05_0000106 (LandPlants) Phylogenetic Tree(s): OG_05_0000106_tree ,
OG_06_0000058 (SeedPlants) Phylogenetic Tree(s): OG_06_0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00204520
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT5G03150 JKD C2H2-like zinc finger protein 0.03 Archaeplastida
AT5G66730 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
Gb_03909 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Gb_17209 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g14010.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g51590.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g13400.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os08g44050.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os09g27650.2 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10430013g0020 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_10430137g0020 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp1g15660.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Pp3c1_16920V3.1 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
Pp3c2_20240V3.1 No alias indeterminate(ID)-domain 2 0.02 Archaeplastida
Pp3c5_20980V3.1 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
Solyc06g062670.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc06g072360.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc07g053570.4.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc11g069240.2.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e004751_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e010628_P002 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e016559_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!