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  5. AMTR_s00060p00141630

AMTR_s00060p00141630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00060.82

Description : Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana


Gene families : OG0010041 (Archaeplastida) Phylogenetic Tree(s): OG0010041_tree ,
OG_05_0009710 (LandPlants) Phylogenetic Tree(s): OG_05_0009710_tree ,
OG_06_0008177 (SeedPlants) Phylogenetic Tree(s): OG_06_0008177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00141630
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 321
IPR002885 Pentatricopeptide_repeat 211 252
IPR002885 Pentatricopeptide_repeat 104 128
IPR002885 Pentatricopeptide_repeat 178 201
IPR002885 Pentatricopeptide_repeat 138 165
No external refs found!