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  5. AMTR_s00072p00173000

AMTR_s00072p00173000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00072.122

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.ENP1 assembly factor


Gene families : OG0005043 (Archaeplastida) Phylogenetic Tree(s): OG0005043_tree ,
OG_05_0005513 (LandPlants) Phylogenetic Tree(s): OG_05_0005513_tree ,
OG_06_0005223 (SeedPlants) Phylogenetic Tree(s): OG_06_0005223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00072p00173000
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.16 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Cre01.g063267 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01011050001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
LOC_Os09g18320.1 No alias SSU processome assembly factor (ENP1) 0.03 Archaeplastida
Mp5g10140.1 No alias SSU processome assembly factor (ENP1) 0.06 Archaeplastida
Pp3c10_5710V3.1 No alias No annotation 0.05 Archaeplastida
Pp3c14_4070V3.1 No alias No annotation 0.03 Archaeplastida
Solyc07g056550.3.1 No alias SSU processome assembly factor (ENP1) 0.03 Archaeplastida
Zm00001e006514_P004 No alias SSU processome assembly factor (ENP1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004828 serine-tRNA ligase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006434 seryl-tRNA aminoacylation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007955 Bystin 131 421
No external refs found!