AT1G56460

Description : HIT zinc finger ;PAPA-1-like conserved region

Gene families : OG0003126 (Archaeplastida) Phylogenetic Tree(s): OG0003126_tree ,
OG_05_0002763 (LandPlants) Phylogenetic Tree(s): OG_05_0002763_tree ,
OG_06_0041753 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56460
Cluster	HCCA: Cluster_203

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os12g37430.1	No alias	component IES2 of INO80 chromatin remodeling complex	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0004105	choline-phosphate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
CC	GO:0005771	multivesicular body	IEP	Neighborhood
CC	GO:0005774	vacuolar membrane	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006816	calcium ion transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006896	Golgi to vacuole transport	IEP	Neighborhood
BP	GO:0007030	Golgi organization	IEP	Neighborhood
BP	GO:0007033	vacuole organization	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
BP	GO:0007041	lysosomal transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0008333	endosome to lysosome transport	IEP	Neighborhood
BP	GO:0009408	response to heat	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009644	response to high light intensity	IEP	Neighborhood
BP	GO:0009903	chloroplast avoidance movement	IEP	Neighborhood
BP	GO:0009904	chloroplast accumulation movement	IEP	Neighborhood
MF	GO:0009940	amino-terminal vacuolar sorting propeptide binding	IEP	Neighborhood
BP	GO:0010187	negative regulation of seed germination	IEP	Neighborhood
BP	GO:0010193	response to ozone	IEP	Neighborhood
MF	GO:0010209	vacuolar sorting signal binding	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
CC	GO:0017119	Golgi transport complex	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
CC	GO:0030904	retromer complex	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Neighborhood
MF	GO:0046577	long-chain-alcohol oxidase activity	IEP	Neighborhood
BP	GO:0046777	protein autophosphorylation	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0055063	sulfate ion homeostasis	IEP	Neighborhood
BP	GO:0055081	anion homeostasis	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0071484	cellular response to light intensity	IEP	Neighborhood
BP	GO:0071486	cellular response to high light intensity	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072505	divalent inorganic anion homeostasis	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood
BP	GO:2000072	regulation of defense response to fungus, incompatible interaction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006880	INO80B_C	367	450
IPR007529	Znf_HIT	467	498

External Links

No external refs found!

AT1G56460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation