AMTR_s00106p00043170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.22

Description : Leucine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana


Gene families : OG0004918 (Archaeplastida) Phylogenetic Tree(s): OG0004918_tree ,
OG_05_0006347 (LandPlants) Phylogenetic Tree(s): OG_05_0006347_tree ,
OG_06_0024738 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00043170
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00044210 evm_27.TU.AmTr_v1... Leucine--tRNA ligase, chloroplastic/mitochondrial... 0.03 Archaeplastida
GSVIVT01012668001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 Archaeplastida
LOC_Os01g03020.1 No alias leucine-tRNA ligase 0.02 Archaeplastida
Solyc02g080990.2.1 No alias leucine-tRNA ligase 0.02 Archaeplastida
Zm00001e025691_P001 No alias leucine-tRNA ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009186 deoxyribonucleoside diphosphate metabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0030674 protein binding, bridging IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 225 338
IPR002300 aa-tRNA-synth_Ia 141 167
No external refs found!