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  5. AMTR_s00142p00099380

AMTR_s00142p00099380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00142.66

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS18 component


Gene families : OG0001796 (Archaeplastida) Phylogenetic Tree(s): OG0001796_tree ,
OG_05_0001726 (LandPlants) Phylogenetic Tree(s): OG_05_0001726_tree ,
OG_06_0002411 (SeedPlants) Phylogenetic Tree(s): OG_06_0002411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00142p00099380
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.03 Archaeplastida
Cre06.g272950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.03 Archaeplastida
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.03 Archaeplastida
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.02 Archaeplastida
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.03 Archaeplastida
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.02 Archaeplastida
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.02 Archaeplastida
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.02 Archaeplastida
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.02 Archaeplastida
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.03 Archaeplastida
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.02 Archaeplastida
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.02 Archaeplastida
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!