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  5. AMTR_s00171p00062290

AMTR_s00171p00062290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00171.46

No description available


Gene families : OG0006551 (Archaeplastida) Phylogenetic Tree(s): OG0006551_tree ,
OG_05_0006848 (LandPlants) Phylogenetic Tree(s): OG_05_0006848_tree ,
OG_06_0008734 (SeedPlants) Phylogenetic Tree(s): OG_06_0008734_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00171p00062290
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cre02.g083400 No alias No description available 0.03 Archaeplastida
Gb_00254 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e006736_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000439 transcription factor TFIIH core complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0004835 tubulin-tyrosine ligase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR010733 DUF1308 37 183
IPR010733 DUF1308 310 478
No external refs found!