Aliases : evm_27.TU.AmTr_v1.0_scaffold00354.1
Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component
Gene families : OG0004975 (Archaeplastida) Phylogenetic Tree(s): OG0004975_tree ,
OG_05_0004978 (LandPlants) Phylogenetic Tree(s): OG_05_0004978_tree ,
OG_06_0004361 (SeedPlants) Phylogenetic Tree(s): OG_06_0004361_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00354p00009120 | |
Cluster | HCCA: Cluster_248 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G48500 | PTAC10, PDE312 | Nucleic acid-binding, OB-fold-like protein | 0.11 | Archaeplastida | |
Cre07.g348500 | No alias | No description available | 0.01 | Archaeplastida | |
GSVIVT01008490001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.08 | Archaeplastida | |
Gb_30753 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.06 | Archaeplastida | |
Gb_30755 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
Gb_30756 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
LOC_Os01g67570.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
MA_10428299g0010 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
MA_10435142g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
MA_14025g0020 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.06 | Archaeplastida | |
Mp4g08250.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.08 | Archaeplastida | |
Pp3c18_13570V3.1 | No alias | Nucleic acid-binding, OB-fold-like protein | 0.1 | Archaeplastida | |
Smo438805 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.08 | Archaeplastida | |
Solyc03g111050.3.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.07 | Archaeplastida | |
Zm00001e028549_P001 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.1 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0001871 | pattern binding | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
MF | GO:0003746 | translation elongation factor activity | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0004109 | coproporphyrinogen oxidase activity | IEP | Neighborhood |
MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004655 | porphobilinogen synthase activity | IEP | Neighborhood |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
MF | GO:0004852 | uroporphyrinogen-III synthase activity | IEP | Neighborhood |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005840 | ribosome | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006457 | protein folding | IEP | Neighborhood |
BP | GO:0006470 | protein dephosphorylation | IEP | Neighborhood |
BP | GO:0006508 | proteolysis | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
BP | GO:0006605 | protein targeting | IEP | Neighborhood |
BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
BP | GO:0006720 | isoprenoid metabolic process | IEP | Neighborhood |
BP | GO:0006721 | terpenoid metabolic process | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0008104 | protein localization | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
BP | GO:0008150 | biological_process | IEP | Neighborhood |
BP | GO:0008152 | metabolic process | IEP | Neighborhood |
MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Neighborhood |
MF | GO:0008312 | 7S RNA binding | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016108 | tetraterpenoid metabolic process | IEP | Neighborhood |
BP | GO:0016109 | tetraterpenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016116 | carotenoid metabolic process | IEP | Neighborhood |
BP | GO:0016117 | carotenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Neighborhood |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016829 | lyase activity | IEP | Neighborhood |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Neighborhood |
MF | GO:0016836 | hydro-lyase activity | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0016987 | sigma factor activity | IEP | Neighborhood |
BP | GO:0017038 | protein import | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
BP | GO:0019725 | cellular homeostasis | IEP | Neighborhood |
MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Neighborhood |
BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | Neighborhood |
BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
BP | GO:0042592 | homeostatic process | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
BP | GO:0045454 | cell redox homeostasis | IEP | Neighborhood |
BP | GO:0046148 | pigment biosynthetic process | IEP | Neighborhood |
MF | GO:0046429 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Neighborhood |
CC | GO:0048500 | signal recognition particle | IEP | Neighborhood |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Neighborhood |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Neighborhood |
BP | GO:0051205 | protein insertion into membrane | IEP | Neighborhood |
MF | GO:0052592 | oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor | IEP | Neighborhood |
BP | GO:0065008 | regulation of biological quality | IEP | Neighborhood |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
MF | GO:2001070 | starch binding | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |