AT1G66050 (VIM2, ORTH5)

Aliases : VIM2, ORTH5

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0002340 (Archaeplastida) Phylogenetic Tree(s): OG0002340_tree ,
OG_05_0002708 (LandPlants) Phylogenetic Tree(s): OG_05_0002708_tree ,
OG_06_0002795 (SeedPlants) Phylogenetic Tree(s): OG_06_0002795_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G66050
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AT5G39550	VIM3, ORTH1	Zinc finger (C3HC4-type RING finger) family protein	0.04	Archaeplastida
GSVIVT01008653001	No alias	E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc05g023670.3.1	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031935	regulation of chromatin silencing	None	Extended
BP	GO:0031937	positive regulation of chromatin silencing	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060968	regulation of gene silencing	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090308	regulation of methylation-dependent chromatin silencing	None	Extended
BP	GO:0090309	positive regulation of methylation-dependent chromatin silencing	IMP	Interproscan
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902275	regulation of chromatin organization	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905269	positive regulation of chromatin organization	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended
BP	GO:2001252	positive regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003756	protein disulfide isomerase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006885	regulation of pH	IEP	Neighborhood
BP	GO:0007000	nucleolus organization	IEP	Neighborhood
MF	GO:0008172	S-methyltransferase activity	IEP	Neighborhood
BP	GO:0008300	isoprenoid catabolic process	IEP	Neighborhood
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
CC	GO:0015630	microtubule cytoskeleton	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015774	polysaccharide transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0016103	diterpenoid catabolic process	IEP	Neighborhood
BP	GO:0016115	terpenoid catabolic process	IEP	Neighborhood
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:0042447	hormone catabolic process	IEP	Neighborhood
BP	GO:0045487	gibberellin catabolic process	IEP	Neighborhood
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003105	SRA_YDG	259	410
IPR027370	Znf-RING_LisH	498	540

External Links

No external refs found!

AT1G66050 (VIM2, ORTH5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation