AT1G69940 (ATPPME1, PPME1)

Aliases : ATPPME1, PPME1

Description : Pectin lyase-like superfamily protein

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0009459 (LandPlants) Phylogenetic Tree(s): OG_05_0009459_tree ,
OG_06_0008011 (SeedPlants) Phylogenetic Tree(s): OG_06_0008011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G69940
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00116p00025230	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00123p00050980	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
AT3G17060	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT5G07430	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT5G61680	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01034985001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
Gb_23209	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os03g19610.1	No alias	pectin methylesterase	0.07	Archaeplastida
LOC_Os11g43830.1	No alias	pectin methylesterase	0.06	Archaeplastida
LOC_Os11g45720.1	No alias	pectin methylesterase	0.08	Archaeplastida
LOC_Os11g45730.1	No alias	pectin methylesterase	0.08	Archaeplastida
LOC_Os12g37660.1	No alias	pectin methylesterase	0.06	Archaeplastida
MA_112715g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_181657g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_99816g0010	No alias	pectin methylesterase	0.02	Archaeplastida
Pp3c10_18650V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c10_19460V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_3840V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Solyc05g052110.3.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc05g052120.4.1	No alias	No annotation	0.06	Archaeplastida
Solyc12g008530.2.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc12g099230.2.1	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e002891_P001	No alias	pectin methylesterase	0.06	Archaeplastida
Zm00001e020795_P001	No alias	pectin methylesterase	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005783	endoplasmic reticulum	NAS	Interproscan
CC	GO:0005794	Golgi apparatus	NAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IDA	Interproscan
BP	GO:0009860	pollen tube growth	IMP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IMP	Interproscan
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042742	defense response to bacterium	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050829	defense response to Gram-negative bacterium	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0090406	pollen tube	IDA	Interproscan
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004473	malate dehydrogenase (decarboxylating) (NADP+) activity	IEP	Neighborhood
MF	GO:0004623	phospholipase A2 activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006108	malate metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006814	sodium ion transport	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Neighborhood
BP	GO:0006875	cellular metal ion homeostasis	IEP	Neighborhood
BP	GO:0006885	regulation of pH	IEP	Neighborhood
BP	GO:0007204	positive regulation of cytosolic calcium ion concentration	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009566	fertilization	IEP	Neighborhood
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0009664	plant-type cell wall organization	IEP	Neighborhood
BP	GO:0009827	plant-type cell wall modification	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010351	lithium ion transport	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015385	sodium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015491	cation:cation antiporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
MF	GO:0016004	phospholipase activator activity	IEP	Neighborhood
MF	GO:0016175	superoxide-generating NADPH oxidase activity	IEP	Neighborhood
MF	GO:0016298	lipase activity	IEP	Neighborhood
CC	GO:0016324	apical plasma membrane	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016652	oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	IEP	Neighborhood
BP	GO:0017157	regulation of exocytosis	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
CC	GO:0030427	site of polarized growth	IEP	Neighborhood
MF	GO:0030551	cyclic nucleotide binding	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
BP	GO:0035725	sodium ion transmembrane transport	IEP	Neighborhood
CC	GO:0035838	growing cell tip	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044463	cell projection part	IEP	Neighborhood
CC	GO:0045177	apical part of cell	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0045595	regulation of cell differentiation	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046910	pectinesterase inhibitor activity	IEP	Neighborhood
BP	GO:0048868	pollen tube development	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Neighborhood
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051046	regulation of secretion	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
CC	GO:0051286	cell tip	IEP	Neighborhood
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	Neighborhood
BP	GO:0051510	regulation of unidimensional cell growth	IEP	Neighborhood
BP	GO:0051648	vesicle localization	IEP	Neighborhood
BP	GO:0051650	establishment of vesicle localization	IEP	Neighborhood
BP	GO:0055065	metal ion homeostasis	IEP	Neighborhood
BP	GO:0055074	calcium ion homeostasis	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0060229	lipase activator activity	IEP	Neighborhood
BP	GO:0060284	regulation of cell development	IEP	Neighborhood
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Neighborhood
CC	GO:0070382	exocytic vesicle	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0080092	regulation of pollen tube growth	IEP	Neighborhood
CC	GO:0090404	pollen tube tip	IEP	Neighborhood
CC	GO:0098590	plasma membrane region	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
BP	GO:0098771	inorganic ion homeostasis	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
CC	GO:0099503	secretory vesicle	IEP	Neighborhood
MF	GO:0099516	ion antiporter activity	IEP	Neighborhood
CC	GO:0120038	plasma membrane bounded cell projection part	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1903530	regulation of secretion by cell	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	73	351

External Links

No external refs found!

AT1G69940 (ATPPME1, PPME1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation