AT1G72370 (P40, AP40, RPSAA, RP40)


Aliases : P40, AP40, RPSAA, RP40

Description : 40s ribosomal protein SA


Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G72370
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
AMTR_s00041p00084080 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
GSVIVT01016695001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.32 Archaeplastida
Gb_02349 No alias component RPSa of SSU proteome 0.05 Archaeplastida
Gb_10091 No alias component RPSa of SSU proteome 0.07 Archaeplastida
LOC_Os03g08440.1 No alias component RPSa of SSU proteome 0.15 Archaeplastida
LOC_Os07g42450.1 No alias component RPSa of SSU proteome 0.21 Archaeplastida
MA_10436984g0020 No alias component RPSa of SSU proteome 0.13 Archaeplastida
MA_112104g0010 No alias component RPSa of SSU proteome 0.2 Archaeplastida
MA_6868827g0010 No alias No annotation 0.02 Archaeplastida
Mp2g26290.1 No alias component RPSa of SSU proteome 0.39 Archaeplastida
Pp3c14_15670V3.1 No alias 40s ribosomal protein SA 0.03 Archaeplastida
Pp3c14_15680V3.1 No alias 40s ribosomal protein SA B 0.02 Archaeplastida
Pp3c14_15700V3.1 No alias 40s ribosomal protein SA B 0.22 Archaeplastida
Pp3c14_17310V3.1 No alias 40s ribosomal protein SA B 0.19 Archaeplastida
Pp3c17_17600V3.1 No alias 40s ribosomal protein SA 0.28 Archaeplastida
Pp3c1_24120V3.1 No alias 40s ribosomal protein SA 0.1 Archaeplastida
Solyc03g019780.4.1 No alias component RPSa of SSU proteome 0.38 Archaeplastida
Solyc06g072120.3.1 No alias component RPSa of SSU proteome 0.47 Archaeplastida
Zm00001e000273_P001 No alias component RPSa of SSU proteome 0.3 Archaeplastida
Zm00001e010780_P001 No alias component RPSa of SSU proteome 0.29 Archaeplastida
Zm00001e038859_P001 No alias component RPSa of SSU proteome 0.29 Archaeplastida
Zm00001e038860_P002 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Zm00001e038933_P001 No alias component RPSa of SSU proteome 0.38 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IBA Interproscan
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
MF GO:0003735 structural constituent of ribosome IBA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006096 glycolytic process RCA Interproscan
BP GO:0006407 rRNA export from nucleus IBA Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006412 translation IBA Interproscan
BP GO:0006833 water transport RCA Interproscan
BP GO:0006970 response to osmotic stress IEP Interproscan
BP GO:0006972 hyperosmotic response RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
BP GO:0009266 response to temperature stimulus RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009651 response to salt stress IEP Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
CC GO:0015935 small ribosomal subunit IDA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit ISS Interproscan
CC GO:0030686 90S preribosome IBA Interproscan
BP GO:0042256 mature ribosome assembly IDA Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
BP GO:0046686 response to cadmium ion RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004152 dihydroorotate dehydrogenase activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010015 root morphogenesis IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
CC GO:0015030 Cajal body IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032870 cellular response to hormone stimulus IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071229 cellular response to acid chemical IEP Neighborhood
BP GO:0071310 cellular response to organic substance IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0071495 cellular response to endogenous stimulus IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090506 axillary shoot meristem initiation IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901701 cellular response to oxygen-containing compound IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 23 117
IPR001865 Ribosomal_S2 121 186
No external refs found!