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  5. Cpa|evm.model.tig00000704.61

Cpa|evm.model.tig00000704.61


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.TOZ assembly factor


Gene families : OG0003962 (Archaeplastida) Phylogenetic Tree(s): OG0003962_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000704.61
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00053570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
AT5G16750 TOZ Transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Cre07.g344050 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01024351001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Gb_13772 No alias SSU processome assembly factor (TOZ) 0.02 Archaeplastida
LOC_Os04g50660.1 No alias SSU processome assembly factor (TOZ) 0.04 Archaeplastida
MA_10601g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10601g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_566936g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp8g08070.1 No alias SSU processome assembly factor (TOZ) 0.04 Archaeplastida
Pp3c19_12460V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Smo80645 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Solyc03g097160.4.1 No alias SSU processome assembly factor (TOZ) 0.03 Archaeplastida
Zm00001e007090_P001 No alias SSU processome assembly factor (TOZ) 0.04 Archaeplastida
Zm00001e041546_P002 No alias SSU processome assembly factor (TOZ) 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 24 58
IPR001680 WD40_repeat 425 462
IPR001680 WD40_repeat 231 266
IPR001680 WD40_repeat 386 420
IPR001680 WD40_repeat 283 317
IPR001680 WD40_repeat 340 372
No external refs found!