AT2G02660

Description : F-box associated ubiquitination effector family protein

Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G02660
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AT1G23037	No alias	F-box associated ubiquitination effector family protein	0.04	Archaeplastida
AT1G30790	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G30925	No alias	phospholipase Cs	0.04	Archaeplastida
AT1G32660	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT1G33010	No alias	F-box and associated interaction domains-containing protein	0.03	Archaeplastida
AT1G43005	No alias	FUNCTIONS IN: molecular_function unknown; INVOLVED IN:...	0.06	Archaeplastida
AT1G46840	No alias	F-box family protein	0.05	Archaeplastida
AT1G47765	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G50870	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G50880	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT1G53360	No alias	F-box associated ubiquitination effector family protein	0.07	Archaeplastida
AT1G53370	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT1G60370	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT1G61060	No alias	F-box family protein	0.04	Archaeplastida
AT1G67130	No alias	F-box family protein	0.04	Archaeplastida
AT2G16220	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT2G16810	No alias	F-box and associated interaction domains-containing protein	0.06	Archaeplastida
AT2G23160	No alias	F-box family protein	0.04	Archaeplastida
AT2G31470	DOR	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT2G32470	No alias	F-box associated ubiquitination effector family protein	0.05	Archaeplastida
AT2G40910	No alias	F-box and associated interaction domains-containing protein	0.05	Archaeplastida
AT3G52320	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT4G19940	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G22791	No alias	F-box family protein	0.04	Archaeplastida
AT5G42430	No alias	F-box and associated interaction domains-containing protein	0.07	Archaeplastida
AT5G44220	No alias	F-box family protein	0.04	Archaeplastida
AT5G50220	No alias	F-box family protein	0.1	Archaeplastida
AT5G52610	No alias	F-box and associated interaction domains-containing protein	0.04	Archaeplastida
AT5G52620	No alias	F-box associated ubiquitination effector family protein	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005673	transcription factor TFIIE complex	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0010219	regulation of vernalization response	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048442	sepal development	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048832	specification of plant organ number	IEP	Neighborhood
BP	GO:0048833	specification of floral organ number	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013187	F-box-assoc_dom_typ3	200	344

External Links

No external refs found!

AT2G02660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation