AT1G08050

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0000379 (Archaeplastida) Phylogenetic Tree(s): OG0000379_tree ,
OG_05_0000514 (LandPlants) Phylogenetic Tree(s): OG_05_0000514_tree ,
OG_06_0001859 (SeedPlants) Phylogenetic Tree(s): OG_06_0001859_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08050
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00068590	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT3G54780	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.04	Archaeplastida
GSVIVT01009240001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01016259001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
LOC_Os06g05990.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os08g03270.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.07	Archaeplastida
LOC_Os10g32740.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os10g32760.1	No alias	Probable E3 ubiquitin-protein ligase WAVH2...	0.04	Archaeplastida
MA_11225g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_218345g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Smo141910	No alias	No description available	0.02	Archaeplastida
Solyc02g091710.3.1	No alias	ubiquitin protein ligase (WAV3)	0.07	Archaeplastida
Solyc05g056140.4.1	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e000344_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Zm00001e004621_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.07	Archaeplastida
Zm00001e008822_P002	No alias	ubiquitin protein ligase (WAV3)	0.03	Archaeplastida
Zm00001e010994_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e012729_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e023647_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e041206_P001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007154	cell communication	RCA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009409	response to cold	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009690	cytokinin metabolic process	RCA	Interproscan
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009814	defense response, incompatible interaction	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0016999	antibiotic metabolic process	None	Extended
BP	GO:0017000	antibiotic biosynthetic process	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0023014	signal transduction by protein phosphorylation	None	Extended
BP	GO:0030968	endoplasmic reticulum unfolded protein response	RCA	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034754	cellular hormone metabolic process	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEP	Neighborhood
CC	GO:0000813	ESCRT I complex	IEP	Neighborhood
BP	GO:0001678	cellular glucose homeostasis	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004049	anthranilate synthase activity	IEP	Neighborhood
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005313	L-glutamate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005326	neurotransmitter transporter activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
CC	GO:0005950	anthranilate synthase complex	IEP	Neighborhood
BP	GO:0006566	threonine metabolic process	IEP	Neighborhood
BP	GO:0006567	threonine catabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006814	sodium ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006835	dicarboxylic acid transport	IEP	Neighborhood
BP	GO:0006836	neurotransmitter transport	IEP	Neighborhood
BP	GO:0006862	nucleotide transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006885	regulation of pH	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009309	amine biosynthetic process	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009407	toxin catabolic process	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010311	lateral root formation	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015172	acidic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015181	arginine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015385	sodium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015491	cation:cation antiporter activity	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015748	organophosphate ester transport	IEP	Neighborhood
BP	GO:0015800	acidic amino acid transport	IEP	Neighborhood
BP	GO:0015802	basic amino acid transport	IEP	Neighborhood
BP	GO:0015807	L-amino acid transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
MF	GO:0016833	oxo-acid-lyase activity	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0031935	regulation of chromatin silencing	IEP	Neighborhood
BP	GO:0031937	positive regulation of chromatin silencing	IEP	Neighborhood
BP	GO:0033500	carbohydrate homeostasis	IEP	Neighborhood
BP	GO:0035725	sodium ion transmembrane transport	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0042593	glucose homeostasis	IEP	Neighborhood
BP	GO:0043090	amino acid import	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044440	endosomal part	IEP	Neighborhood
BP	GO:0046219	indolalkylamine biosynthetic process	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0046982	protein heterodimerization activity	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051938	L-glutamate import	IEP	Neighborhood
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Neighborhood
BP	GO:0060968	regulation of gene silencing	IEP	Neighborhood
BP	GO:0071322	cellular response to carbohydrate stimulus	IEP	Neighborhood
BP	GO:0071326	cellular response to monosaccharide stimulus	IEP	Neighborhood
BP	GO:0071331	cellular response to hexose stimulus	IEP	Neighborhood
BP	GO:0071333	cellular response to glucose stimulus	IEP	Neighborhood
BP	GO:0090308	regulation of methylation-dependent chromatin silencing	IEP	Neighborhood
BP	GO:0090309	positive regulation of methylation-dependent chromatin silencing	IEP	Neighborhood
BP	GO:0098754	detoxification	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1902275	regulation of chromatin organization	IEP	Neighborhood
BP	GO:1905269	positive regulation of chromatin organization	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	69	98
IPR032838	Vwaint_dom	551	623
IPR002035	VWF_A	204	378

External Links

No external refs found!

AT1G08050

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation