Cpa|evm.model.tig00021433.2

Description : DNA topoisomerase 2 OS=Arabidopsis thaliana

Gene families : OG0003355 (Archaeplastida) Phylogenetic Tree(s): OG0003355_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021433.2
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00101630	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.04	Archaeplastida
AT3G23890	TOPII, ATTOPII	topoisomerase II	0.04	Archaeplastida
Cre01.g009250	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.02	Archaeplastida
GSVIVT01032138001	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.04	Archaeplastida
Gb_11673	No alias	DNA topoisomerase (TOP2)	0.03	Archaeplastida
Gb_12824	No alias	DNA topoisomerase 2 OS=Pisum sativum (sp\|o24308\|top2_pea : 112.0)	0.03	Archaeplastida
LOC_Os02g47150.1	No alias	DNA topoisomerase (TOP2)	0.03	Archaeplastida
MA_133272g0010	No alias	DNA topoisomerase (TOP2)	0.04	Archaeplastida
MA_6634g0010	No alias	DNA topoisomerase (TOP2)	0.03	Archaeplastida
Mp3g13420.1	No alias	DNA topoisomerase (TOP2)	0.02	Archaeplastida
Pp3c18_20260V3.1	No alias	topoisomerase II	0.03	Archaeplastida
Pp3c19_3610V3.1	No alias	topoisomerase II	0.04	Archaeplastida
Smo127267	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.03	Archaeplastida
Smo98330	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.03	Archaeplastida
Solyc01g087500.3.1	No alias	DNA topoisomerase (TOP2)	0.03	Archaeplastida
Zm00001e015542_P001	No alias	DNA topoisomerase (TOP2)	0.03	Archaeplastida
Zm00001e023296_P001	No alias	DNA topoisomerase (TOP2)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	DNA-dependent ATPase activity	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
MF	GO:0061505	DNA topoisomerase II activity	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003594	HATPase_C	411	503
IPR013506	Topo_IIA_bsu_dom2	593	685

External Links

No external refs found!

Cpa|evm.model.tig00021433.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation