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  5. Gb_03506

Gb_03506


Description : cyclin (CYCB)


Gene families : OG0000492 (Archaeplastida) Phylogenetic Tree(s): OG0000492_tree ,
OG_05_0000357 (LandPlants) Phylogenetic Tree(s): OG_05_0000357_tree ,
OG_06_0000555 (SeedPlants) Phylogenetic Tree(s): OG_06_0000555_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03506
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00032080 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.15 Archaeplastida
AMTR_s00101p00131830 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.14 Archaeplastida
AT1G20610 CYCB2;3 Cyclin B2;3 0.06 Archaeplastida
AT1G76310 CYCB2;4 CYCLIN B2;4 0.15 Archaeplastida
AT2G17620 CYCB2;1 Cyclin B2;1 0.05 Archaeplastida
AT2G26760 CYCB1;4 Cyclin B1;4 0.09 Archaeplastida
AT3G11520 CYCB1;3, CYC2 CYCLIN B1;3 0.07 Archaeplastida
AT4G35620 CYCB2;2 Cyclin B2;2 0.12 Archaeplastida
Cpa|evm.model.tig00000769.38 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.05 Archaeplastida
GSVIVT01009895001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.15 Archaeplastida
GSVIVT01025781001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.17 Archaeplastida
GSVIVT01032782001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.15 Archaeplastida
GSVIVT01036739001 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.16 Archaeplastida
LOC_Os01g59120.1 No alias cyclin (CYCB) 0.14 Archaeplastida
LOC_Os04g47580.1 No alias cyclin (CYCB) 0.13 Archaeplastida
LOC_Os05g41390.1 No alias cyclin (CYCB) 0.13 Archaeplastida
LOC_Os06g51110.2 No alias cyclin (CYCB) 0.13 Archaeplastida
MA_10393012g0020 No alias G2/mitotic-specific cyclin-2 OS=Antirrhinum majus... 0.1 Archaeplastida
MA_10428837g0030 No alias cyclin (CYCB) 0.13 Archaeplastida
MA_10433093g0020 No alias Cyclin-B2-1 OS=Oryza sativa subsp. indica... 0.11 Archaeplastida
MA_127335g0010 No alias cyclin (CYCB) 0.06 Archaeplastida
MA_19215g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_311439g0010 No alias cyclin (CYCB) 0.09 Archaeplastida
MA_738195g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
Mp2g00590.1 No alias cyclin (CYCB) 0.06 Archaeplastida
Mp5g10030.1 No alias cyclin (CYCB) 0.12 Archaeplastida
Pp3c15_21520V3.1 No alias CYCLIN B2;4 0.09 Archaeplastida
Pp3c9_18910V3.1 No alias CYCLIN B2;4 0.1 Archaeplastida
Smo230742 No alias Cell cycle.regulation.cyclins.CYCB-type cyclin 0.09 Archaeplastida
Solyc01g009040.4.1 No alias cyclin (CYCB) 0.1 Archaeplastida
Solyc02g082820.3.1 No alias cyclin (CYCB) 0.03 Archaeplastida
Solyc03g032190.3.1 No alias cyclin (CYCB) 0.07 Archaeplastida
Solyc04g081660.3.1 No alias Cyclin-B2-4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc04g082430.3.1 No alias cyclin (CYCB) 0.03 Archaeplastida
Solyc07g066660.4.1 No alias cyclin (CYCB) 0.08 Archaeplastida
Solyc10g078330.2.1 No alias cyclin (CYCB) 0.04 Archaeplastida
Solyc10g080950.2.1 No alias cyclin (CYCB) 0.02 Archaeplastida
Zm00001e007244_P001 No alias cyclin (CYCB) 0.1 Archaeplastida
Zm00001e019528_P002 No alias cyclin (CYCB) 0.07 Archaeplastida
Zm00001e025467_P001 No alias Cyclin-B1-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e027336_P001 No alias cyclin (CYCB) 0.03 Archaeplastida
Zm00001e028899_P002 No alias cyclin (CYCB) 0.17 Archaeplastida
Zm00001e030146_P001 No alias cyclin (CYCB) 0.07 Archaeplastida
Zm00001e041485_P001 No alias cyclin (CYCB) 0.16 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 331 456
IPR004367 Cyclin_C-dom 465 562
No external refs found!