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  5. Gb_05959

Gb_05959


Description : PAP6/FLN1 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000505 (Archaeplastida) Phylogenetic Tree(s): OG0000505_tree ,
OG_05_0006095 (LandPlants) Phylogenetic Tree(s): OG_05_0006095_tree ,
OG_06_0013170 (SeedPlants) Phylogenetic Tree(s): OG_06_0013170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05959
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AT3G54090 FLN1 fructokinase-like 1 0.03 Archaeplastida
Gb_38659 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os01g63220.2 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
MA_10430836g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_659042g0010 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Mp7g17740.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Solyc02g091490.4.1 No alias fructose kinase 0.04 Archaeplastida
Solyc09g011850.4.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
Zm00001e019266_P002 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011611 PfkB_dom 156 371
No external refs found!