Gb_06267

Description : component alpha type-4 of 26S proteasome

Gene families : OG0003804 (Archaeplastida) Phylogenetic Tree(s): OG0003804_tree ,
OG_05_0004062 (LandPlants) Phylogenetic Tree(s): OG_05_0004062_tree ,
OG_06_0005299 (SeedPlants) Phylogenetic Tree(s): OG_06_0005299_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_06267
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00097510	evm_27.TU.AmTr_v1...	Protein degradation.26S proteasome.20S core...	0.03	Archaeplastida
AT3G51260	PAD1	20S proteasome alpha subunit PAD1	0.04	Archaeplastida
Cre01.g030850	No alias	Protein degradation.26S proteasome.20S core...	0.05	Archaeplastida
LOC_Os08g43540.1	No alias	component alpha type-4 of 26S proteasome	0.03	Archaeplastida
MA_10436167g0010	No alias	component alpha type-4 of 26S proteasome	0.03	Archaeplastida
Mp6g07820.1	No alias	component alpha type-4 of 26S proteasome	0.04	Archaeplastida
Pp3c19_7610V3.1	No alias	proteasome alpha subunit D2	0.02	Archaeplastida
Solyc01g111450.3.1	No alias	component alpha type-4 of 26S proteasome	0.06	Archaeplastida
Zm00001e010250_P002	No alias	component alpha type-4 of 26S proteasome	0.03	Archaeplastida
Zm00001e035996_P001	No alias	component alpha type-4 of 26S proteasome	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	IEA	Interproscan
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEA	Interproscan
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	27	210
IPR000426	Proteasome_asu_N	4	26

External Links

No external refs found!

Gb_06267

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation