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Description : PAP5/TAC12 cofactor of plastid-encoded RNA polymerase. transcriptional coactivator (HEMERA)
Gene families : OG0007706 (Archaeplastida) Phylogenetic Tree(s): OG0007706_tree ,
OG_05_0007174 (LandPlants) Phylogenetic Tree(s): OG_05_0007174_tree ,
OG_06_0007904 (SeedPlants) Phylogenetic Tree(s): OG_06_0007904_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_08037 | |
| Cluster | HCCA: Cluster_245 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00092p00069380 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | Archaeplastida | |
| AT2G34640 | PTAC12, HMR | plastid transcriptionally active 12 | 0.04 | Archaeplastida | |
| GSVIVT01021555001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.06 | Archaeplastida | |
| LOC_Os01g56350.3 | No alias | PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... | 0.07 | Archaeplastida | |
| MA_8815984g0010 | No alias | PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... | 0.05 | Archaeplastida | |
| Mp1g24680.1 | No alias | PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... | 0.11 | Archaeplastida | |
| Pp3c3_26950V3.1 | No alias | plastid transcriptionally active 12 | 0.04 | Archaeplastida | |
| Solyc02g070390.3.1 | No alias | PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... | 0.04 | Archaeplastida | |
| Zm00001e019697_P001 | No alias | PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Neighborhood |
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
| BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0015994 | chlorophyll metabolic process | IEP | Neighborhood |
| BP | GO:0015995 | chlorophyll biosynthetic process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
| MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Neighborhood |
| MF | GO:0016874 | ligase activity | IEP | Neighborhood |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| MF | GO:0035596 | methylthiotransferase activity | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
| BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| BP | GO:0046148 | pigment biosynthetic process | IEP | Neighborhood |
| MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0050497 | transferase activity, transferring alkylthio groups | IEP | Neighborhood |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |