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  5. Gb_10091

Gb_10091


Description : component RPSa of SSU proteome


Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10091
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00084080 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.07 Archaeplastida
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
GSVIVT01016695001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
LOC_Os03g08440.1 No alias component RPSa of SSU proteome 0.02 Archaeplastida
LOC_Os07g42450.1 No alias component RPSa of SSU proteome 0.05 Archaeplastida
MA_10436984g0020 No alias component RPSa of SSU proteome 0.09 Archaeplastida
MA_112104g0010 No alias component RPSa of SSU proteome 0.1 Archaeplastida
Mp2g26290.1 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Pp3c14_15680V3.1 No alias 40s ribosomal protein SA B 0.02 Archaeplastida
Pp3c17_17600V3.1 No alias 40s ribosomal protein SA 0.03 Archaeplastida
Pp3c1_24120V3.1 No alias 40s ribosomal protein SA 0.02 Archaeplastida
Solyc03g019780.4.1 No alias component RPSa of SSU proteome 0.06 Archaeplastida
Solyc06g072120.3.1 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Zm00001e000273_P001 No alias component RPSa of SSU proteome 0.05 Archaeplastida
Zm00001e010780_P001 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Zm00001e038859_P001 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Zm00001e038933_P001 No alias component RPSa of SSU proteome 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 17 111
IPR001865 Ribosomal_S2 116 181
No external refs found!