AT1G09530 (PIF3, POC1, PAP3)

Aliases : PIF3, POC1, PAP3

Description : phytochrome interacting factor 3

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G09530
Cluster	HCCA: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00265010	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	Archaeplastida
AT1G27740	RSL4	root hair defective 6-like 4	0.06	Archaeplastida
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.05	Archaeplastida
AT2G14760	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT4G00120	GT140, IND1, IND, EDA33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	Archaeplastida
AT4G33880	RSL2	ROOT HAIR DEFECTIVE 6-LIKE 2	0.05	Archaeplastida
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.05	Archaeplastida
AT5G43175	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01018164001	No alias	Transcription factor UNE10 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_27869	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g02110.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os01g61480.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os02g48060.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os03g10770.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
LOC_Os03g42100.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os03g56950.2	No alias	transcription factor (bHLH). PIF red/far-red light...	0.02	Archaeplastida
LOC_Os05g04740.2	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os07g05010.2	No alias	transcription factor (bHLH). PIF red/far-red light...	0.02	Archaeplastida
LOC_Os08g01700.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os08g36740.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os09g28210.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
LOC_Os12g39850.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
LOC_Os12g41650.2	No alias	transcription factor (bHLH). PIF red/far-red light...	0.02	Archaeplastida
MA_100071g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_26114g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_306658g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
MA_83500g0010	No alias	transcription factor (bHLH)	0.08	Archaeplastida
MA_88831g0010	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Mp5g09710.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Pp3c10_19020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c14_20740V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c17_15380V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c25_13740V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Smo405220	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
Solyc01g107140.3.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc02g091440.2.1	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Solyc02g093280.2.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc03g044460.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc04g077960.1.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc12g088380.1.1	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e005046_P003	No alias	transcription factor (bHLH). PIF red/far-red light...	0.03	Archaeplastida
Zm00001e015610_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e017430_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e020012_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e020477_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e025656_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e027758_P002	No alias	transcription factor (bHLH)	0.07	Archaeplastida
Zm00001e034339_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e035422_P001	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Zm00001e038765_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007165	signal transduction	TAS	Interproscan
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009639	response to red or far red light	IMP	Interproscan
BP	GO:0009704	de-etiolation	IMP	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	IMP	Interproscan
BP	GO:0010017	red or far-red light signaling pathway	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031537	regulation of anthocyanin metabolic process	None	Extended
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IMP	Interproscan
MF	GO:0042802	identical protein binding	IPI	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0000103	sulfate assimilation	IEP	Neighborhood
BP	GO:0000412	histone peptidyl-prolyl isomerization	IEP	Neighborhood
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0006534	cysteine metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006649	phospholipid transfer to membrane	IEP	Neighborhood
MF	GO:0008142	oxysterol binding	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
BP	GO:0008154	actin polymerization or depolymerization	IEP	Neighborhood
MF	GO:0008430	selenium binding	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0009062	fatty acid catabolic process	IEP	Neighborhood
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009638	phototropism	IEP	Neighborhood
BP	GO:0009641	shade avoidance	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009720	detection of hormone stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009726	detection of endogenous stimulus	IEP	Neighborhood
BP	GO:0009727	detection of ethylene stimulus	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009896	positive regulation of catabolic process	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0009968	negative regulation of signal transduction	IEP	Neighborhood
BP	GO:0010030	positive regulation of seed germination	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0010269	response to selenium ion	IEP	Neighborhood
MF	GO:0010296	prenylcysteine methylesterase activity	IEP	Neighborhood
BP	GO:0010345	suberin biosynthetic process	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0010648	negative regulation of cell communication	IEP	Neighborhood
BP	GO:0015914	phospholipid transport	IEP	Neighborhood
BP	GO:0016042	lipid catabolic process	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016630	protochlorophyllide reductase activity	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
BP	GO:0019344	cysteine biosynthetic process	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
BP	GO:0023057	negative regulation of signaling	IEP	Neighborhood
BP	GO:0030041	actin filament polymerization	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0032934	sterol binding	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0042761	very long-chain fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0043901	negative regulation of multi-organism process	IEP	Neighborhood
BP	GO:0044242	cellular lipid catabolic process	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0045862	positive regulation of proteolysis	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0046620	regulation of organ growth	IEP	Neighborhood
BP	GO:0046622	positive regulation of organ growth	IEP	Neighborhood
MF	GO:0046910	pectinesterase inhibitor activity	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048444	floral organ morphogenesis	IEP	Neighborhood
BP	GO:0048445	carpel morphogenesis	IEP	Neighborhood
BP	GO:0048462	carpel formation	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048582	positive regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048639	positive regulation of developmental growth	IEP	Neighborhood
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
MF	GO:0051723	protein methylesterase activity	IEP	Neighborhood
MF	GO:0051740	ethylene binding	IEP	Neighborhood
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0070542	response to fatty acid	IEP	Neighborhood
BP	GO:0071241	cellular response to inorganic substance	IEP	Neighborhood
BP	GO:0071248	cellular response to metal ion	IEP	Neighborhood
BP	GO:0071291	cellular response to selenium ion	IEP	Neighborhood
BP	GO:0071398	cellular response to fatty acid	IEP	Neighborhood
MF	GO:0072328	alkene binding	IEP	Neighborhood
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
BP	GO:0080126	ovary septum development	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Neighborhood
BP	GO:1900424	regulation of defense response to bacterium	IEP	Neighborhood
BP	GO:1900425	negative regulation of defense response to bacterium	IEP	Neighborhood
BP	GO:1901483	regulation of transcription factor catabolic process	IEP	Neighborhood
BP	GO:1901485	positive regulation of transcription factor catabolic process	IEP	Neighborhood
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1903050	regulation of proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903052	positive regulation of proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903362	regulation of cellular protein catabolic process	IEP	Neighborhood
BP	GO:1903364	positive regulation of cellular protein catabolic process	IEP	Neighborhood
BP	GO:1905328	plant septum development	IEP	Neighborhood
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	347	393

External Links

No external refs found!

AT1G09530 (PIF3, POC1, PAP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation