Gb_12177


Description : A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12177
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00026380 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
MA_177507g0010 No alias Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii... 0.02 Archaeplastida
Solyc12g014080.2.1 No alias A-class RAB GTPase 0.01 Archaeplastida
Zm00001e012878_P002 No alias A-class RAB GTPase 0.01 Archaeplastida
Zm00001e026848_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003937 IMP cyclohydrolase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019238 cyclohydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!