AT2G27230 (LHW)

Aliases : LHW

Description : transcription factor-related

Gene families : OG0001327 (Archaeplastida) Phylogenetic Tree(s): OG0001327_tree ,
OG_05_0000903 (LandPlants) Phylogenetic Tree(s): OG_05_0000903_tree ,
OG_06_0001711 (SeedPlants) Phylogenetic Tree(s): OG_06_0001711_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G27230
Cluster	HCCA: Cluster_190

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00176130	evm_27.TU.AmTr_v1...	Transcription factor LHW OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00069p00042170	evm_27.TU.AmTr_v1...	Transcription factor LHW OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01019626001	No alias	Transcription factor LHW OS=Arabidopsis thaliana	0.04	Archaeplastida
MA_18030g0010	No alias	transcription factor (bHLH)	0.05	Archaeplastida
Solyc06g074110.3.1	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc08g082940.2.1	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc09g011170.3.1	No alias	Transcription factor EMB1444 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc09g066280.4.1	No alias	Transcription factor EMB1444 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Zm00001e009089_P003	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.07	Archaeplastida
Zm00001e015411_P002	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e024625_P002	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.08	Archaeplastida
Zm00001e039416_P001	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e041446_P005	No alias	Transcription factor LHW OS=Arabidopsis thaliana...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006342	chromatin silencing	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010073	meristem maintenance	RCA	Interproscan
BP	GO:0010074	maintenance of meristem identity	None	Extended
BP	GO:0010078	maintenance of root meristem identity	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010479	stele development	IMP	Interproscan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016458	gene silencing	None	Extended
BP	GO:0016569	covalent chromatin modification	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019827	stem cell population maintenance	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	gene silencing by RNA	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IPI	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045892	negative regulation of transcription, DNA-templated	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	IDA	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0098727	maintenance of cell number	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0000278	mitotic cell cycle	IEP	Neighborhood
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0002252	immune effector process	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003724	RNA helicase activity	IEP	Neighborhood
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004004	ATP-dependent RNA helicase activity	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0006346	methylation-dependent chromatin silencing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
BP	GO:0007015	actin filament organization	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Neighborhood
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Neighborhood
BP	GO:0007267	cell-cell signaling	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Neighborhood
MF	GO:0008186	RNA-dependent ATPase activity	IEP	Neighborhood
CC	GO:0009574	preprophase band	IEP	Neighborhood
BP	GO:0009615	response to virus	IEP	Neighborhood
BP	GO:0009616	virus induced gene silencing	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009826	unidimensional cell growth	IEP	Neighborhood
BP	GO:0009932	cell tip growth	IEP	Neighborhood
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0010050	vegetative phase change	IEP	Neighborhood
BP	GO:0010052	guard cell differentiation	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010088	phloem development	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010090	trichome morphogenesis	IEP	Neighborhood
BP	GO:0010232	vascular transport	IEP	Neighborhood
BP	GO:0010233	phloem transport	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	Neighborhood
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Neighborhood
BP	GO:0010638	positive regulation of organelle organization	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016246	RNA interference	IEP	Neighborhood
CC	GO:0016324	apical plasma membrane	IEP	Neighborhood
BP	GO:0016441	posttranscriptional gene silencing	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
BP	GO:0022622	root system development	IEP	Neighborhood
BP	GO:0023052	signaling	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	Neighborhood
BP	GO:0030832	regulation of actin filament length	IEP	Neighborhood
BP	GO:0030833	regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031050	dsRNA fragmentation	IEP	Neighborhood
CC	GO:0031209	SCAR complex	IEP	Neighborhood
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
BP	GO:0032271	regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032273	positive regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	Neighborhood
BP	GO:0032970	regulation of actin filament-based process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0035194	posttranscriptional gene silencing by RNA	IEP	Neighborhood
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	Neighborhood
BP	GO:0035821	modification of morphology or physiology of other organism	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0043254	regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0044003	modification by symbiont of host morphology or physiology	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044419	interspecies interaction between organisms	IEP	Neighborhood
BP	GO:0045010	actin nucleation	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0045926	negative regulation of growth	IEP	Neighborhood
MF	GO:0046030	inositol trisphosphate phosphatase activity	IEP	Neighborhood
BP	GO:0046164	alcohol catabolic process	IEP	Neighborhood
BP	GO:0046174	polyol catabolic process	IEP	Neighborhood
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Neighborhood
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Neighborhood
BP	GO:0048016	inositol phosphate-mediated signaling	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048467	gynoecium development	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048479	style development	IEP	Neighborhood
BP	GO:0048480	stigma development	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051125	regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051127	positive regulation of actin nucleation	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051607	defense response to virus	IEP	Neighborhood
BP	GO:0051701	interaction with host	IEP	Neighborhood
BP	GO:0051817	modification of morphology or physiology of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052018	modulation by symbiont of RNA levels in host	IEP	Neighborhood
BP	GO:0052249	modulation of RNA levels in other organism involved in symbiotic interaction	IEP	Neighborhood
MF	GO:0052745	inositol phosphate phosphatase activity	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	Neighborhood
BP	GO:0071545	inositol phosphate catabolic process	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
BP	GO:0098586	cellular response to virus	IEP	Neighborhood
CC	GO:0098590	plasma membrane region	IEP	Neighborhood
BP	GO:0110053	regulation of actin filament organization	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:2000603	regulation of secondary growth	IEP	Neighborhood
BP	GO:2000604	negative regulation of secondary growth	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025610	MYC/MYB_N	5	158

External Links

No external refs found!

AT2G27230 (LHW)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation