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  5. AT1G09890

AT1G09890


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0000794 (Archaeplastida) Phylogenetic Tree(s): OG0000794_tree ,
OG_05_0000615 (LandPlants) Phylogenetic Tree(s): OG_05_0000615_tree ,
OG_06_0000503 (SeedPlants) Phylogenetic Tree(s): OG_06_0000503_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09890
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01006302001 No alias No description available 0.03 Archaeplastida
GSVIVT01012710001 No alias No description available 0.03 Archaeplastida
Gb_00786 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp2g13590.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g011280.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e021493_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000325 plant-type vacuole IEP Neighborhood
CC GO:0000815 ESCRT III complex IEP Neighborhood
MF GO:0004816 asparagine-tRNA ligase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005794 Golgi apparatus IEP Neighborhood
CC GO:0005798 Golgi-associated vesicle IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006816 calcium ion transport IEP Neighborhood
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006896 Golgi to vacuole transport IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009408 response to heat IEP Neighborhood
BP GO:0009636 response to toxic substance IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor IEP Neighborhood
MF GO:0016664 oxidoreductase activity, acting on other nitrogenous compounds as donors, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
CC GO:0030133 transport vesicle IEP Neighborhood
CC GO:0030135 coated vesicle IEP Neighborhood
CC GO:0030136 clathrin-coated vesicle IEP Neighborhood
CC GO:0030140 trans-Golgi network transport vesicle IEP Neighborhood
BP GO:0030834 regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030835 negative regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030837 negative regulation of actin filament polymerization IEP Neighborhood
BP GO:0031333 negative regulation of protein complex assembly IEP Neighborhood
BP GO:0032272 negative regulation of protein polymerization IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
BP GO:0042542 response to hydrogen peroxide IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043242 negative regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0047889 ferredoxin-nitrate reductase activity IEP Neighborhood
MF GO:0050421 nitrite reductase (NO-forming) activity IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051494 negative regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051693 actin filament capping IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0080165 callose deposition in phloem sieve plate IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
MF GO:0098809 nitrite reductase activity IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:1901879 regulation of protein depolymerization IEP Neighborhood
BP GO:1901880 negative regulation of protein depolymerization IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 342 411
IPR010325 Rhamnogal_lyase 1 184
IPR029411 RG-lyase_III 426 612
No external refs found!